SMTL ID : 8gh6.1

Bombyx mori R2 retrotransposon initiating target-primed reverse transcription

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.114, C.117, H.130, H.135 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.114, A:C.117, A:H.130, A:H.135 ZN.2: 4 residues within 4Å: Chain A: C.934, C.938, H.946, C.951 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.934, A:C.938, A:H.946, A:C.951

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.529, F.530, D.628 Ligands: TTP.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.529, A:F.530, A:D.628

1 x TTP: THYMIDINE-5'-TRIPHOSPHATE(Non-covalent)

TTP.4: 15 residues within 4Å: Chain A: K.452, R.463, D.529, F.530, A.531, K.532, A.533, F.534, Q.588, D.628, N.659 Chain C: T.24 Chain D: A.247, A.248 Ligands: MG.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:F.534, A:Q.588 Hydrogen bonds: A:D.529, A:F.530, A:K.532, A:A.533, A:F.534, A:N.659 Salt bridges: A:K.452, A:K.452, A:R.463, A:R.463, A:K.662 pi-Cation interactions: A:R.463

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilkinson, M.E. et al., Structure of the R2 non-LTR retrotransposon initiating target-primed reverse transcription. Science (2023)

Release Date

2023-04-05

Peptides

Reverse transcriptase-like protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reverse transcriptase-like protein