SMTL ID : 8gko.1

Crystal Structure Analysis of Aspergillus fumigatus alkaline protease

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.06 Å

Oligo State

hetero-1-1-mer

Ligands

1 x IMD: IMIDAZOLE(Non-covalent)

IMD.1: 3 residues within 4Å: Chain B: Y.139, S.169, N.170 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.170 Water bridges: B:Y.139

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain B: Q.5, K.83, T.84 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Q.5 EDO.3: 1 residues within 4Å: Ligands: EDO.4 No protein-ligand interaction detected (PLIP) EDO.4: 1 residues within 4Å: Ligands: EDO.3 No protein-ligand interaction detected (PLIP) EDO.5: 3 residues within 4Å: Chain B: V.121, S.122, G.124 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.121

3 x FOR: FORMYL GROUP(Non-covalent)

FOR.6: 6 residues within 4Å: Chain B: L.57, A.58, Y.59, N.60, H.66 Ligands: FOR.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.66 Water bridges: B:N.60 FOR.7: 8 residues within 4Å: Chain B: A.62, V.98, F.99, Q.100, G.101, S.103, S.104, I.108 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.100, B:G.101 FOR.8: 5 residues within 4Å: Chain B: N.60, G.64, S.65, H.66 Ligands: FOR.6 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.60 Water bridges: B:H.66

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 5 residues within 4Å: Chain B: A.174, A.179, T.181, V.200, D.202 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.181, B:D.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pattelli, O.N. et al., Targeting Aspergillus allergen oryzin with a chemical probe at atomic precision. Sci Rep (2023)

Release Date

2023-11-01

Peptides

Alkaline protease 1: A
Alkaline protease 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Alkaline protease 1

Alkaline protease 1

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