SMTL ID : 8gl8.1

The Type 9 Secretion System Extended Translocon - SprA-PorV-PPI-RemZ-SkpA-SprE complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-3-1-mer

Ligands

1 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)

LMN.1: 13 residues within 4Å: Chain A: V.143, M.145, F.2305, F.2363, S.2364, L.2367, L.2397, Y.2399 Chain C: L.74, M.365, F.393, F.395, G.396 15 PLIP interactions: 9 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:V.143, A:F.2305, A:F.2363, A:F.2363, A:F.2363, A:L.2367, A:L.2397, A:Y.2399, C:L.74, C:F.393, C:F.393, C:F.393, C:F.395, C:F.395 Hydrogen bonds: A:S.2364

6 x MAN: alpha-D-mannopyranose(Post Translational Modification)(Non-covalent)

MAN.2: 3 residues within 4Å: Chain H: Y.241, N.246, S.249 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:N.246 MAN.3: 2 residues within 4Å: Chain H: E.209, S.212 No protein-ligand interaction detected (PLIP) MAN.4: 4 residues within 4Å: Chain H: Y.349, K.367, Y.368, S.371 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:Y.349, H:Y.368 MAN.5: 3 residues within 4Å: Chain H: S.408, V.412, R.420 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:R.420 MAN.6: 4 residues within 4Å: Chain H: A.571, S.574, I.575, E.578 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:A.571, H:S.574, H:E.578 MAN.7: 2 residues within 4Å: Chain H: N.286, T.288 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lauber, F. et al., The Type 9 Secretion System caught in the act of transport. Nat Microbiol (2024)

Release Date

2024-01-31

Peptides

Protein involved in gliding motility SprA: A
Peptidyl-prolyl cis-trans isomerase: B
Type IX secretion system protein PorV domain-containing protein: C
RemZ: D
Periplasmic chaperone for outer membrane proteins Skp: EFG
SprE: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
F

D
D

E
G

F
C

G
E

H
I

Protein involved in gliding motility SprA

Peptidyl-prolyl cis-trans isomerase

Type IX secretion system protein PorV domain-containing protein

RemZ

Periplasmic chaperone for outer membrane proteins Skp

SprE

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