SMTL ID : 8glf.1

Crystal Structure of Human CD1b in Complex with Sphingomyelin C34:2

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 2.00 Å
Oligo State
hetero-1-1-mer
Ligands
1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x NAG- NAG- BMA- MAN- MAN- FUC- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
1 x 3LY: [(~{Z},2~{R},3~{S})-2-(hexadecanoylamino)-3-oxidanyl-octadec-4-enyl] 2-(trimethyl-$l^{4}-azanyl)ethyl hydrogen phosphate(Non-covalent)
1 x 6UL: TETRACOSYL PALMITATE(Non-covalent)
4 x CL: CHLORIDE ION(Non-functional Binders)
2 x IOD: IODIDE ION(Non-functional Binders)
1 x NI: NICKEL (II) ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Huang, S. et al., CD1 lipidomes reveal lipid-binding motifs and size-based antigen-display mechanisms. Cell (2023)
Release Date
2023-09-20
Peptides
T-cell surface glycoprotein CD1b: A
Beta-2-microglobulin: B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B

T-cell surface glycoprotein CD1b

Beta-2-microglobulin

Related Entries With Identical Sequence

5l2j.1 | 5wke.1 | 5wkg.1 | 5wki.1 | 5wl1.1 | 6cug.1 | 6d64.1 | 8dv3.1 | 8dv4.1 | 8gle.1 | 8glg.1 | 8glh.1 | 8gli.1