SMTL ID : 8gni.1

Human SARM1 bounded with NMN and Nanobody-C6, Conformation 1

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-1-mer

Ligands

1 x NMN: BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE(Non-covalent)

NMN.1: 16 residues within 4Å: Chain A: W.103, R.110, Q.114, E.149, Q.150, I.151, L.152, V.153, R.157, H.190, K.193, D.317, T.318, S.319, Q.320, D.325 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.110, A:Q.114, A:L.152, A:L.152, A:H.190, A:T.318, A:S.319, A:D.325, A:D.325 Salt bridges: A:R.157, A:H.190, A:K.193 pi-Stacking: A:W.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hou, Y.N. et al., A conformation-specific nanobody targeting the nicotinamide mononucleotide-activated state of SARM1. Nat Commun (2022)

Release Date

2023-01-18

Peptides

NAD(+) hydrolase SARM1: AB
Nanobody C6: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

NAD(+) hydrolase SARM1

Nanobody C6

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