SMTL ID : 8goy.1

SulE P44R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: N.141, S.142, S.143, F.175, M.178 Chain B: F.52, Y.53 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.141, A:N.141, A:S.142, B:Y.53 Water bridges: A:G.179 GOL.2: 5 residues within 4Å: Chain A: D.172, K.176 Chain B: G.27, R.28, Y.53 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:T.29, A:D.172, A:D.172, A:K.176 GOL.4: 7 residues within 4Å: Chain A: F.52, Y.53 Chain B: N.141, S.142, S.143, F.175, M.178 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.141, B:S.142, B:F.175, A:Y.53 Water bridges: B:N.141, B:N.141, B:G.179, B:G.179 GOL.5: 4 residues within 4Å: Chain B: F.23, F.61, Y.107, H.199 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.107, B:Y.107

1 x JV6: 5-[(4,6-dimethoxypyrimidin-2-yl)carbamoylsulfamoyl]-1-methyl-pyrazole-4-carboxylic acid(Non-covalent)

JV6.3: 11 residues within 4Å: Chain A: S.22, F.23, Y.24, I.25, F.61, Y.107, H.199 Chain B: S.87, G.91, Y.170, N.173 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.173 Water bridges: B:R.13, B:P.89 Hydrophobic interactions: A:F.61 pi-Stacking: A:F.23, A:H.199

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, B. et al., Crystal structures of herbicide-detoxifying esterase reveal a lid loop affecting substrate binding and activity. Nat Commun (2023)

Release Date

2023-08-02

Peptides

Alpha/beta fold hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alpha/beta fold hydrolase