SMTL ID : 8gpz.1

Crystal structure of BRD4 bromodomain 1 (BD1) in complex with C239-0012

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

monomer

Ligands

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 4 residues within 4Å: Chain A: T.18, Q.20, N.79, A.80 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.80 FMT.2: 2 residues within 4Å: Chain A: K.57, K.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.60

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: Y.23, K.118, E.121 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.23, A:Y.23, A:E.121

1 x KC3: 3-methyl-6-(4-methylpiperidin-1-yl)-[1,2,4]triazolo[4,3-b]pyridazine(Non-covalent)

KC3.4: 7 residues within 4Å: Chain A: W.39, P.40, V.45, L.50, Y.97, N.98, I.104 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.39, A:W.39, A:P.40, A:V.45 Hydrogen bonds: A:N.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J.H. et al., Crystal structure of [1,2,4]triazolo[4,3-b]pyridazine derivatives as BRD4 bromodomain inhibitors and structure-activity relationship study. Sci Rep (2023)

Release Date

2023-01-18

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain-containing protein 4

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