SMTL ID : 8gqj.1

Structure of Thiolase from Pseudomonas aeruginosa PAO1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-tetramer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.69, E.70, P.100, A.121, D.126, A.127 Chain B: Q.120, S.301 6 PLIP interactions: 2 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.126, B:Q.120, B:S.301 Water bridges: A:E.70, B:K.113, B:R.319 GOL.3: 7 residues within 4Å: Chain B: D.23, V.24, R.123, R.295, I.296, A.297, Y.299 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.23, B:D.23, B:V.24, B:V.24, B:R.295, B:A.297 Water bridges: B:R.123, B:R.123 GOL.4: 8 residues within 4Å: Chain A: Q.120, S.301 Chain B: D.69, E.70, P.100, A.121, D.126, A.127 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.113, A:Q.120, A:S.301, A:S.301, B:D.126 Water bridges: A:K.113, A:Q.120 GOL.7: 8 residues within 4Å: Chain C: D.69, E.70, P.100, A.121, D.126, A.127 Chain D: Q.120, S.301 6 PLIP interactions: 2 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:D.126, D:Q.120, D:S.301 Water bridges: C:E.70, D:K.113, D:R.319 GOL.9: 7 residues within 4Å: Chain D: D.23, V.24, R.123, R.295, I.296, A.297, Y.299 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:D.23, D:V.24, D:V.24, D:R.295, D:A.297 Water bridges: D:R.123 GOL.10: 8 residues within 4Å: Chain C: Q.120, S.301 Chain D: D.69, E.70, P.100, A.121, D.126, A.127 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:K.113, C:Q.120, C:S.301, C:S.301, D:D.126 Water bridges: C:K.113, C:Q.120

4 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 6 residues within 4Å: Chain A: I.164, L.168, W.169, H.176, L.270 Chain C: M.154 No protein-ligand interaction detected (PLIP) PGE.6: 7 residues within 4Å: Chain B: I.164, L.168, H.176, F.256, A.264, L.270 Chain D: M.154 No protein-ligand interaction detected (PLIP) PGE.8: 6 residues within 4Å: Chain A: M.154 Chain C: I.164, L.168, W.169, H.176, L.270 No protein-ligand interaction detected (PLIP) PGE.12: 7 residues within 4Å: Chain B: M.154 Chain D: I.164, L.168, H.176, F.256, A.264, L.270 No protein-ligand interaction detected (PLIP)

2 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.5: 8 residues within 4Å: Chain B: R.55, L.58, E.59, L.63, I.91, K.92, A.93, G.94 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.55, B:R.55 2PE.11: 8 residues within 4Å: Chain D: R.55, L.58, E.59, L.63, I.91, K.92, A.93, G.94 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.55, D:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hong, J. et al., Structure of thiolase from Pseudomonas aeruginosa PAO1. To Be Published

Release Date

2024-03-13

Peptides

Thiolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Thiolase