SMTL ID : 8grj.1 (1 other biounit)

Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase in complex with gluconolactone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Covalent)

FAD.1: 37 residues within 4Å: Chain B: V.14, G.15, S.16, G.17, V.18, A.19, L.37, E.38, A.39, Q.94, I.96, R.97, A.98, G.101, T.102, T.103, H.105, W.106, A.107, A.108, S.109, M.219, A.248, V.249, V.250, A.284, A.285, N.286, E.289, I.293, N.475, H.476, N.519, V.520, T.521, I.524 Ligands: LGC.3 28 PLIP interactions: 28 interactions with chain B Hydrophobic interactions: B:Q.94, B:W.106, B:N.475 Hydrogen bonds: B:V.18, B:A.19, B:A.39, B:R.97, B:T.102, B:T.102, B:T.102, B:T.102, B:A.107, B:S.109, B:S.109, B:V.250, B:V.250, B:N.286, B:N.286, B:N.475, B:N.519, B:T.521, B:T.521 Water bridges: B:G.17, B:G.20, B:T.103 pi-Stacking: B:W.106, B:W.106 pi-Cation interactions: B:H.476

1 x F3S: FE3-S4 CLUSTER(Non-covalent)

F3S.2: 13 residues within 4Å: Chain B: R.201, C.212, C.213, G.214, N.215, N.216, N.217, C.218, C.222, I.224, A.226, G.338, P.339 3 PLIP interactions: 3 interactions with chain B, Metal complexes: B:C.212, B:C.218, B:C.222

1 x LGC: D-glucono-1,5-lactone(Non-covalent)

LGC.3: 10 residues within 4Å: Chain B: A.107, M.219, E.341, H.363, F.406, N.474, N.475, H.476, N.519 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.341, B:N.474, B:N.475, B:H.476, B:N.519 Salt bridges: B:H.476

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yoshida, H. et al., Crystal structure of gamma-alpha subunit complex from Burkholderia cepacia FAD glucose dehydrogenase in complex with gluconolactone. To Be Published

Release Date

2023-09-06

Peptides

twin-arginine translocation pathway signal: A
Glucose dehydrogenase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

twin-arginine translocation pathway signal

Glucose dehydrogenase

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