SMTL ID : 8gsr.2 (1 other biounit)

Crystal structure of L-2,4-diketo-3-deoxyrhamnonate hydrolase from Sphingomonas sp. (apo-form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

homo-dimer

Ligands

5 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain A: I.82, E.130, E.132, D.161, K.179 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.130, A:E.132, A:D.161, H2O.2, H2O.7 MG.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.3: 1 residues within 4Å: Chain A: D.202 No protein-ligand interaction detected (PLIP) MG.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain B: I.82, E.130, E.132, D.161, K.179 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.130, B:E.132, B:D.161, H2O.15, H2O.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fukuhara, S. et al., Crystal Structure of l-2,4-Diketo-3-deoxyrhamnonate Hydrolase Involved in the Nonphosphorylated l-Rhamnose Pathway from Bacteria. Biochemistry (2023)

Release Date

2023-02-08

Peptides

L-2,4-diketo-3-deoxyrhamnonate hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

L-2,4-diketo-3-deoxyrhamnonate hydrolase

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