SMTL ID : 8gu0.1

Crystal structure of a fungal halogenase RadH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.42 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 33 residues within 4Å: Chain A: G.13, G.14, G.15, P.16, A.17, L.35, E.36, A.37, D.38, R.42, H.44, I.45, G.46, E.47, S.48, R.106, V.128, K.129, V.130, A.177, T.178, G.179, A.202, I.238, D.301, G.318, D.319, F.323, P.326, S.329, G.331, H.332, A.335 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:I.45, A:I.45, A:A.202, A:F.323, A:P.326 Hydrogen bonds: A:G.14, A:A.17, A:A.37, A:R.42, A:R.42, A:I.45, A:E.47, A:S.48, A:S.48, A:R.106, A:R.106, A:V.130, A:V.130, A:D.319, A:D.319, A:G.331, A:H.332 Water bridges: A:G.15, A:G.15, A:T.178, A:G.179, A:R.180, A:R.180, A:S.329, A:S.330, A:H.333 Salt bridges: A:H.44 FAD.6: 31 residues within 4Å: Chain B: G.13, G.15, P.16, A.17, L.35, E.36, A.37, D.38, R.42, H.44, I.45, G.46, E.47, S.48, R.106, V.128, K.129, V.130, A.177, T.178, G.179, A.202, W.236, D.301, D.319, F.323, P.326, S.329, G.331, H.332, A.335 32 PLIP interactions: 32 interactions with chain B Hydrophobic interactions: B:I.45, B:I.45, B:I.45, B:A.202, B:W.236, B:F.323 Hydrogen bonds: B:G.14, B:A.17, B:A.37, B:D.38, B:R.42, B:H.44, B:I.45, B:E.47, B:S.48, B:S.48, B:R.106, B:R.106, B:V.130, B:V.130, B:D.319, B:D.319, B:G.331, B:H.332 Water bridges: B:G.15, B:G.18, B:A.177, B:G.179, B:R.180, B:S.330, B:H.333 Salt bridges: B:H.44

7 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 6 residues within 4Å: Chain A: R.27, E.28, K.119, S.120, H.512 Ligands: PG4.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.120 PG4.3: 6 residues within 4Å: Chain A: D.61, T.65, K.115, H.116, K.119 Ligands: PG4.2 No protein-ligand interaction detected (PLIP) PG4.4: 3 residues within 4Å: Chain A: G.164, R.165, S.166 No protein-ligand interaction detected (PLIP) PG4.5: 4 residues within 4Å: Chain A: R.180, Q.298, A.299, T.300 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.180, A:R.180, A:T.300 PG4.7: 2 residues within 4Å: Chain B: R.27, H.512 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.27 PG4.8: 6 residues within 4Å: Chain B: P.137, Y.138, D.139, N.150, P.151, G.152 No protein-ligand interaction detected (PLIP) PG4.9: 4 residues within 4Å: Chain B: H.40, F.114, K.115, Q.126 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.40, B:K.115, B:Q.126

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 4 residues within 4Å: Chain B: K.74, A.77, F.79, S.329 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peh, G. et al., Further Characterization of Fungal Halogenase RadH and Its Homologs. Biomolecules (2023)

Release Date

2023-07-26

Peptides

Non-heme halogenase radH: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-heme halogenase radH