SMTL ID : 8gv6.1

Crystal structure of PN-SIA28 in complex with influenza hemagglutinin H14 (A/long-tailed duck/Wisconsin/10OS3912/2010)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-3-3-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: T.44, K.286, N.297, V.298, G.313, S.314 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 6 residues within 4Å: Chain C: T.44, K.286, N.297, V.298, G.313, S.314 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 7 residues within 4Å: Chain C: N.165, T.167, R.207, I.244 Chain E: S.219, P.221, R.222 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrophobic interactions: C:I.244 Hydrogen bonds: E:R.222 NAG-NAG.4: 5 residues within 4Å: Chain E: K.286, N.297, V.298, G.313, S.314 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: S.219 Chain E: N.165, T.167, I.244 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain A Hydrogen bonds: E:N.165, E:T.167, A:S.219, A:S.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Structural basis for a human broadly neutralizing influenza A hemagglutinin stem-specific antibody including H17/18 subtypes. Nat Commun (2022)

Release Date

2022-12-21

Peptides

Hemagglutinin H14-HA1: ACE
Hemagglutinin H14-HA2: BDF
PN-SIA28 heavy chain: GI
PN-SIA28 light chain: HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
G

I
I

H
H

J
J

Hemagglutinin H14-HA1

Hemagglutinin H14-HA2

PN-SIA28 heavy chain

PN-SIA28 light chain

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