SMTL ID : 8gwj.1

SARS CoV-2 Mpro 1-302 C145A in complex with peptide 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x VAL- LYS- LEU- GLN- ALA- VAL- PHE- ARG: VAL-LYS-LEU-GLN-ALA-VAL-PHE-ARG(Non-covalent)

VAL-LYS-LEU-GLN-ALA-VAL-PHE-ARG.1: 24 residues within 4Å: Chain A: T.24, T.25, T.26, L.27, H.41, S.46, M.49, F.140, L.141, N.142, G.143, S.144, A.145, H.163, H.164, M.165, E.166, P.168, H.172, D.187, R.188, Q.189, T.190, Q.192 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:T.25, A:T.26, A:L.27, A:H.41, A:D.187, A:Q.189 Hydrogen bonds: A:T.24, A:T.26, A:T.26, A:H.41, A:S.46, A:F.140, A:G.143, A:S.144, A:S.144, A:A.145, A:H.164, A:E.166, A:E.166, A:Q.189 VAL-LYS-LEU-GLN-ALA-VAL-PHE-ARG.2: 25 residues within 4Å: Chain B: T.24, T.25, T.26, L.27, H.41, C.44, T.45, S.46, M.49, F.140, L.141, N.142, G.143, S.144, A.145, H.163, H.164, M.165, E.166, L.167, H.172, D.187, Q.189, T.190, Q.192 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:T.25, B:L.27, B:H.41, B:L.167, B:D.187, B:Q.189, B:Q.192 Hydrogen bonds: B:T.24, B:T.26, B:T.26, B:H.41, B:F.140, B:G.143, B:S.144, B:S.144, B:A.145, B:H.164, B:E.166, B:E.166, B:Q.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, M. et al., SARS CoV-2 Mpro 1-302 C145A in complex with peptide 7. To Be Published

Release Date

2023-09-20

Peptides

Replicase polyprotein 1ab: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Replicase polyprotein 1ab

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