SMTL ID : 8gy6.1

Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-2-1-mer

Ligands

2 x GO3: Gossypol(Non-covalent)

GO3.1: 6 residues within 4Å: Chain A: K.593, L.854, E.857, I.864, M.924, Q.932 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:E.857, A:I.864 Hydrogen bonds: A:K.593, A:Q.932 GO3.2: 5 residues within 4Å: Chain A: Q.408, D.499, K.500, N.507, N.543 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.507 Hydrogen bonds: A:Q.408, A:N.543

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., Structure of SARS-CoV-2 RNA-dependent RNA polymerase with gossypol binding. To Be Published

Release Date

2023-11-01

Peptides

RNA-directed RNA polymerase: A
Non-structural protein 8: BD
Non-structural protein 7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

C
C

RNA-directed RNA polymerase

Non-structural protein 8

Non-structural protein 7

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