SMTL ID : 8gyq.1

Cryo-EM structure of human Pannexin-2 in pre-open state.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: P.84, N.86 Chain B: D.266 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.84 Hydrogen bonds: A:N.86 NAG.2: 2 residues within 4Å: Chain B: N.86 Chain C: D.266 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain C: N.86, P.273 Chain D: D.266 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain D: P.84, N.86, P.273 Chain E: D.266 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.86 NAG.5: 3 residues within 4Å: Chain E: P.84, N.86 Chain F: D.266 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.86 NAG.6: 3 residues within 4Å: Chain F: P.84, N.86 Chain G: D.266 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:P.84 Hydrogen bonds: F:N.86 NAG.7: 2 residues within 4Å: Chain A: D.266 Chain G: N.86 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cong, Y. et al., Inner channel lipids regulated gating mechanism of human pannexins. To Be Published

Release Date

2024-04-17

Peptides

Pannexin-2: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Membrane

We predict this structure to be a membrane protein.
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Pannexin-2