SMTL ID : 8h24.1

Leucine-rich alpha-2-glycoprotein 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: V.157, H.161, L.183, N.186 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.157 Hydrogen bonds: A:N.186 Water bridges: A:N.186 NAG.2: 1 residues within 4Å: Chain A: N.79 No protein-ligand interaction detected (PLIP) NAG.3: 2 residues within 4Å: Chain A: N.325, R.328 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.328, A:R.328 NAG.4: 2 residues within 4Å: Chain A: G.245, N.269 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.269

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: H.168, R.191, T.192, R.216 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.192, A:T.192 Water bridges: A:H.168 Salt bridges: A:H.168, A:R.191, A:R.216

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Crystal structure of LRG1 and the functional significance of LRG1 glycan for LPHN2 activation. Exp.Mol.Med. (2023)

Release Date

2023-08-23

Peptides

Leucine-rich alpha-2-glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Leucine-rich alpha-2-glycoprotein