- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 14 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 14 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 6 residues within 4Å:- Chain A: D.218, G.219, R.223, N.246, D.250
- Ligands: MG.3
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.219, A:R.223, A:R.223
FMT.5: 5 residues within 4Å:- Chain A: G.88, T.89, S.114, Q.115
- Chain B: R.240
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:T.89, A:Q.115, B:R.240
- Water bridges: A:D.90, A:K.162, A:K.162
FMT.10: 6 residues within 4Å:- Chain B: D.218, G.219, R.223, N.246, D.250
- Ligands: MG.6
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.219, B:R.223, B:R.223
- Water bridges: B:D.218
FMT.11: 7 residues within 4Å:- Chain A: D.216
- Chain B: F.61, P.206, E.207, V.208, R.302
- Ligands: MG.8
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:V.208, B:R.302, A:D.216
FMT.12: 3 residues within 4Å:- Chain B: L.255, G.258, V.259
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.259
FMT.13: 5 residues within 4Å:- Chain B: G.31, P.32, V.44, Q.45, I.46
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:I.46
FMT.14: 2 residues within 4Å:- Chain B: F.52, Q.53
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.53
- Water bridges: B:Q.53
FMT.18: 6 residues within 4Å:- Chain C: D.218, G.219, R.223, N.246, D.250
- Ligands: MG.17
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:G.219, C:R.223, C:R.223
FMT.19: 5 residues within 4Å:- Chain C: G.88, T.89, S.114, Q.115
- Chain D: R.240
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:T.89, C:Q.115, D:R.240
- Water bridges: C:D.90, C:K.162, C:K.162
FMT.24: 6 residues within 4Å:- Chain D: D.218, G.219, R.223, N.246, D.250
- Ligands: MG.20
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:G.219, D:R.223, D:R.223
- Water bridges: D:D.218, D:D.218
FMT.25: 7 residues within 4Å:- Chain C: D.216
- Chain D: F.61, P.206, E.207, V.208, R.302
- Ligands: MG.22
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:D.216, D:V.208, D:R.302
- Water bridges: D:E.207
FMT.26: 3 residues within 4Å:- Chain D: L.255, G.258, V.259
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:V.259
FMT.27: 5 residues within 4Å:- Chain D: G.31, P.32, V.44, Q.45, I.46
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:I.46
FMT.28: 2 residues within 4Å:- Chain D: F.52, Q.53
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.53
- Water bridges: D:Q.53
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, F. et al., Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme. To Be Published
- Release Date
- 2023-10-18
- Peptides
- L-asparaginase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 14 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 14 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lu, F. et al., Structure-based rational design of Bacillus licheniformis L-asparaginase with low/no D-asparaginase activity for a safer enzyme. To Be Published
- Release Date
- 2023-10-18
- Peptides
- L-asparaginase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B