SMTL ID : 8h5d.1 (1 other biounit)

Crystal structure of YojK mutant in complex with UDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 17 residues within 4Å: Chain A: E.12, G.13, N.16, R.217, S.237, G.239, T.240, S.266, Y.288, V.289, Q.291, H.304, G.306, M.307, N.308, S.309, E.312 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:E.12, A:N.16, A:R.217, A:R.217, A:T.240, A:T.241, A:S.266, A:V.289, A:V.289, A:Q.291, A:Q.291, A:N.308, A:N.308, A:S.309, A:E.312, A:Q.329 Water bridges: A:G.13, A:G.268 Salt bridges: A:H.304, A:H.304

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: F.81, A.84, C.85, H.109, L.110, L.111, A.112, V.180 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.81, A:H.109, A:L.111, A:A.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, S. et al., Improving the Thermostability of Glycosyltransferase YojK by Targeting Mutagenesis for Highly Efficient Biosynthesis of Rebaudioside D. To Be Published

Release Date

2023-10-18

Peptides

Glycosyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycosyltransferase

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