SMTL ID : 8h5t.1

Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-015

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.19, G.20, F.23, N.24 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.19, A:F.23 Hydrogen bonds: A:N.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Development of a bispecific nanobody conjugate broadly neutralizes diverse SARS-CoV-2 variants and structural basis for its broad neutralization. Plos Pathog. (2023)

Release Date

2023-10-18

Peptides

Spike protein S1: A
Nanobody Nb-015: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Spike protein S1

Nanobody Nb-015

Related Entries With Identical Sequence