SMTL ID : 8h6t.1

Complex structure of CDK2/Cyclin E1 and a potent, selective small molecule inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x WZZ: (1R,3S)-3-{3-[(pyridin-2-yl)amino]-1H-pyrazol-5-yl}cyclopentyl propan-2-ylcarbamate(Non-covalent)

WZZ.1: 16 residues within 4Å: Chain A: Y.16, A.32, K.34, V.65, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, Q.132, N.133, L.135, A.145, D.146 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.65, A:F.81, A:F.81, A:F.81, A:F.81, A:D.87, A:L.135 Hydrogen bonds: A:K.34, A:E.82, A:L.84, A:D.146, A:D.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yu, Y. et al., Accelerated Discovery of Macrocyclic CDK2 Inhibitor QR-6401 by Generative Models and Structure-Based Drug Design. Acs Med.Chem.Lett. (2023)

Release Date

2023-02-22

Peptides

Cyclin-dependent kinase 2: A
G1/S-specific cyclin-E1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cyclin-dependent kinase 2

G1/S-specific cyclin-E1

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