SMTL ID : 8h7j.1

The crystal structure of CD163 SRCR5-9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.525 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain A: I.290, N.291, H.297 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- MAN- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-FUC.2: 3 residues within 4Å: Chain A: P.115, L.148, N.209 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.115

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain A: N.461, L.494 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain A: S.215, P.216, N.218, E.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.215, A:S.215, A:P.216, A:N.218, A:N.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ma, H.F. et al., The crystal structure of CD163 SRCR5-9. To Be Published

Release Date

2023-10-25

Peptides

Scavenger receptor cysteine-rich type 1 protein M130: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Scavenger receptor cysteine-rich type 1 protein M130