SMTL ID : 8hbl.1

Crystal structure of the SARS-unique domain (SUD) of SARS-CoV-2 (1.58 angstrom resolution)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: V.86, P.87, T.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.88, A:T.88

1 x LI: LITHIUM ION(Non-covalent)

LI.2: 4 residues within 4Å: Chain A: Y.189, S.199, L.200, T.203 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:Y.189, H2O.3

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: T.7, E.11, F.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.11 GOL.4: 5 residues within 4Å: Chain A: K.194, T.195, T.196, S.199 Ligands: GOL.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.196, A:S.199 GOL.5: 5 residues within 4Å: Chain A: Q.178, E.179, G.180, V.181, Y.189 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.178, A:E.179 Water bridges: A:V.181, A:V.181, A:V.181 GOL.6: 4 residues within 4Å: Chain A: N.26, N.28, K.46 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.28, A:N.28, A:K.46

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qin, B. et al., Identification of the SARS-unique domain of SARS-CoV-2 as an antiviral target. Nat Commun (2023)

Release Date

2023-07-12

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 3