SMTL ID : 8hc0.1

Crystal structure of the extracellular domains of GPR110

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-MAN-MAN-MAN-MAN.1: 12 residues within 4Å: Chain A: I.54, V.55, S.70, S.71, Y.73, I.77, E.91, S.133, T.134, T.135, A.179, N.183 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.73, A:Y.73, A:S.70, A:Y.73, A:S.133, A:S.133 Water bridges: A:Y.73 Hydrophobic interactions: A:V.55, A:I.77

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 5 residues within 4Å: Chain A: N.102, S.144, S.147, N.148, R.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.147, A:R.197 NAG.3: 6 residues within 4Å: Chain A: N.162, T.212, A.213, L.214, P.215, L.216 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.212, A:A.213 NAG.4: 3 residues within 4Å: Chain A: L.101, S.119, N.123 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.119, A:N.123 NAG.5: 6 residues within 4Å: Chain A: T.66, L.67, P.68, G.75, N.76 Chain C: N.15 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:T.66 Hydrogen bonds: A:G.75, A:N.76, C:N.15 Water bridges: C:N.15 NAG.6: 4 residues within 4Å: Chain A: L.97, E.100, L.101, N.104 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.97, A:E.100, A:N.104 NAG.7: 5 residues within 4Å: Chain A: P.247, N.249, L.279, N.283, E.320 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.249, A:N.283, A:N.283, A:E.320, A:E.320, A:E.320 NAG.8: 2 residues within 4Å: Chain C: N.19, S.21 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Crystal Structure of the Extracellular Domains of GPR110. J.Mol.Biol. (2023)

Release Date

2023-09-13

Peptides

Adhesion G-protein coupled receptor F1: A
Adhesion G-protein coupled receptor F1: B
Adhesion G-protein coupled receptor F1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

Adhesion G-protein coupled receptor F1

Adhesion G-protein coupled receptor F1

Adhesion G-protein coupled receptor F1