SMTL ID : 8hcu.1

Crystal structure of BCOR/PCGF1/KDM2B complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.1: 4 residues within 4Å: Chain A: K.86, D.87, D.123, I.124 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.87 ACY.2: 4 residues within 4Å: Chain A: R.200, Y.201, E.227, E.228 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.200 Hydrogen bonds: A:E.227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, R. et al., Calcium modulates the tethering of BCOR-PRC1.1 enzymatic core to KDM2B via liquid-liquid phase separation. Commun Biol (2024)

Release Date

2023-11-15

Peptides

cDNA FLJ55590, highly similar to JmjC domain-containing histone demethylation protein 1B: A
Polycomb group RING finger protein 1: B
BCL-6 corepressor: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

cDNA FLJ55590, highly similar to JmjC domain-containing histone demethylation protein 1B

Polycomb group RING finger protein 1

BCL-6 corepressor