SMTL ID : 8hes.1

Crystal structure of SARS-CoV-2 RBD and NIV-10 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain B: F.17, G.18, F.21, N.22, L.47, S.50 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.17, B:F.21, B:L.47 Hydrogen bonds: B:N.22, B:S.50, B:S.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moriyama, S. et al., Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants. Nat Commun (2023)

Release Date

2023-11-08

Peptides

NIV-10 Fab H-chain: A
Spike protein S1: B
NIV-10 Fab L-chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
C

C
L

NIV-10 Fab H-chain

Spike protein S1

NIV-10 Fab L-chain

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