SMTL ID : 8hez.1

Structure of human SGLT2-MAP17 complex with Dapagliflozin

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.254 No protein-ligand interaction detected (PLIP)

1 x LE6: (2S,3R,4R,5S,6R)-2-[4-chloranyl-3-[(4-ethoxyphenyl)methyl]phenyl]-6-(hydroxymethyl)oxane-3,4,5-triol(Non-covalent)

LE6.2: 20 residues within 4Å: Chain A: N.79, G.83, H.84, G.87, L.88, T.91, V.99, F.102, E.103, A.106, V.161, V.290, S.291, Y.294, W.295, K.325, F.457, D.458, Q.461, Y.530 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.88, A:L.88, A:V.99, A:F.102, A:F.102, A:F.457, A:Q.461 Hydrogen bonds: A:N.79, A:H.84, A:T.91, A:S.291, A:W.295, A:K.325, A:Q.461 pi-Stacking: A:H.84, A:F.102 Halogen bonds: A:G.83

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: A.77, I.80, G.81, A.393, S.396, S.397 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.397

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hiraizumi, M. et al., Transport and inhibition mechanism of the human SGLT2-MAP17 glucose transporter. Nat.Struct.Mol.Biol. (2024)

Release Date

2023-11-15

Peptides

Sodium/glucose cotransporter 2: A
PDZK1-interacting protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Sodium/glucose cotransporter 2

PDZK1-interacting protein 1

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