SMTL ID : 8hfc.1

Cryo-EM structure of yeast Erf2/Erf4 complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x PLM: PALMITIC ACID(Covalent)

PLM.1: 8 residues within 4Å: Chain A: V.102, I.106, H.223, C.225, W.227, F.240, Y.288, L.292 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.102, A:I.106, A:W.227, A:F.240, A:Y.288, A:L.292

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.211, C.214, H.224, C.231 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.211, A:C.214, A:H.224, A:C.231 ZN.3: 4 residues within 4Å: Chain A: C.197, C.200, H.210, C.217 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.197, A:C.200, A:H.210, A:C.217

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, A. et al., Regulation of RAS palmitoyltransferases by accessory proteins and palmitoylation. Nat.Struct.Mol.Biol. (2024)

Release Date

2023-11-22

Peptides

Palmitoyltransferase ERF2: A
Ras modification protein ERF4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
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Palmitoyltransferase ERF2

Ras modification protein ERF4