SMTL ID : 8hfp.1 (1 other biounit)

Crystal structure of the methyl-CpG-binding domain of SETDB2 in complex with the cysteine-rich domain of C11orf46 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

hetero-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.26, C.28, C.33, C.36 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.26, A:C.28, A:C.33, A:C.36 ZN.2: 5 residues within 4Å: Chain A: C.40, C.43, C.48, C.52, R.53 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.40, A:C.43, A:C.48, A:C.52 ZN.4: 4 residues within 4Å: Chain B: H.14, C.16, C.20, C.64 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.14, B:C.16, B:C.20, B:C.64

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: D.13, S.14, D.55 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.14, A:S.14 SO4.5: 3 residues within 4Å: Chain B: S.92, F.93, N.94 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.92, B:F.93 SO4.6: 4 residues within 4Å: Chain A: Y.38, A.39, T.46 Chain B: R.76 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:R.76 Salt bridges: B:R.76 Hydrogen bonds: A:A.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mahana, Y. et al., Structural Evidence for Protein Binding by the Methyl-CpG-Binding Domain of SETDB Proteins. To Be Published

Release Date

2023-11-22

Peptides

ARL14 effector protein: A
Histone-lysine N-methyltransferase SETDB2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

ARL14 effector protein

Histone-lysine N-methyltransferase SETDB2

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