SMTL ID : 8hgs.1

The EGF-bound EGFR ectodomain homodimer

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 10 residues within 4Å: Chain A: N.115, D.347, S.348, L.349, S.350, N.352, V.374, D.379, T.382, T.384 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.347, A:N.115, A:N.115, A:D.347 NAG-NAG-BMA-MAN.2: 10 residues within 4Å: Chain D: N.115, D.347, S.348, L.349, S.350, N.352, V.374, D.379, T.382, T.384 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.115, D:D.347

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: Q.52, N.56, N.57 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.52, A:N.56 NAG.4: 2 residues within 4Å: Chain A: F.172, N.175 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain D: Q.52, N.56, N.57 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.52, D:N.56 NAG.6: 2 residues within 4Å: Chain D: F.172, N.175 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bai, X. et al., Structure and dynamics of the EGFR/HER2 heterodimer. Cell Discov (2023)

Release Date

2023-02-15

Peptides

Epidermal growth factor receptor: AD
Pro-epidermal growth factor: BC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

B
C

C
D

Epidermal growth factor receptor

Pro-epidermal growth factor

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