SMTL ID : 8hi6.1

Crystal structure of the NADP+ and MSA bound N terminal domain of bi-functional malonyl-CoA reductase from Roseiflexus castenholzii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x FK2: 3-oxidanylidenepropanoic acid(Non-covalent)

FK2.1: 9 residues within 4Å: Chain A: T.166, F.168, Y.173, R.176, Y.179, R.216, I.217, M.220 Ligands: NAP.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.217 Hydrogen bonds: A:T.166, A:Y.173, A:Y.173 Salt bridges: A:R.176, A:R.216 FK2.3: 9 residues within 4Å: Chain B: T.166, F.168, Y.173, R.176, Y.179, R.216, I.217, M.220 Ligands: NAP.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.217 Hydrogen bonds: B:Y.173, B:Y.179 Salt bridges: B:R.176, B:R.216

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 31 residues within 4Å: Chain A: G.17, G.20, N.21, I.22, G.23, G.41, R.42, N.43, M.70, D.71, G.72, S.73, N.105, A.106, G.107, S.108, N.139, I.143, I.164, S.165, T.166, Y.179, K.183, P.209, G.210, P.211, I.212, S.214, R.216, I.217 Ligands: FK2.1 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:I.22, A:P.209 Hydrogen bonds: A:N.21, A:I.22, A:G.23, A:R.42, A:N.43, A:D.71, A:G.72, A:S.73, A:G.107, A:N.139, A:Y.179, A:Y.179, A:K.183, A:K.183, A:I.212, A:I.212, A:S.214 Water bridges: A:A.19, A:G.20, A:G.20, A:N.21, A:R.42, A:R.42, A:N.105, A:N.139 Salt bridges: A:R.42, A:R.216, A:R.216 pi-Cation interactions: A:R.42 NAP.4: 31 residues within 4Å: Chain B: G.17, G.20, N.21, I.22, G.23, G.41, R.42, N.43, M.70, D.71, G.72, S.73, N.105, A.106, G.107, S.108, N.139, I.143, I.164, S.165, T.166, Y.179, K.183, P.209, G.210, P.211, I.212, S.214, R.216, I.217 Ligands: FK2.3 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:I.22, B:P.209 Hydrogen bonds: B:N.21, B:I.22, B:G.23, B:R.42, B:N.43, B:G.72, B:S.73, B:G.107, B:N.139, B:Y.179, B:K.183, B:K.183, B:I.212, B:I.212, B:S.214 Water bridges: B:A.19, B:G.20, B:G.20, B:N.21, B:R.42, B:R.42, B:N.105, B:N.139 Salt bridges: B:R.42, B:R.216, B:R.216 pi-Cation interactions: B:R.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, X. et al., Structural basis of a bi-functional malonyl-CoA reductase (MCR) from the photosynthetic green non-sulfur bacterium Roseiflexus castenholzii. Mbio (2023)

Release Date

2023-05-31

Peptides

Short-chain dehydrogenase/reductase SDR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Short-chain dehydrogenase/reductase SDR