SMTL ID : 8hje.1

Vismodegib binds to the catalytical domain of human Ubiquitin-Specific Protease 28

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

monomer

Ligands

1 x VIS: 2-chloranyl-~{N}-(4-chloranyl-3-pyridin-2-yl-phenyl)-4-methylsulfonyl-benzamide(Non-covalent)

VIS.1: 14 residues within 4Å: Chain A: L.31, S.108, T.111, H.112, L.115, F.143, Q.166, T.215, E.217, L.218, S.219, Y.320, C.321, M.323 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.31, A:S.108, A:L.115, A:L.115, A:Q.166, A:T.215, A:E.217, A:Y.320 pi-Stacking: A:F.143 Halogen bonds: A:S.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, D. et al., Structure-based discovery of potent USP28 inhibitors derived from Vismodegib. Eur.J.Med.Chem. (2023)

Release Date

2023-05-03

Peptides

Ubiquitin carboxyl-terminal hydrolase 28: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ubiquitin carboxyl-terminal hydrolase 28