SMTL ID : 8hlk.1

Structure of McyB-C1A1 complexed with L-Leu and AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x LEU: LEUCINE(Non-covalent)

LEU.1: 14 residues within 4Å: Chain A: F.667, D.668, W.672, F.711, G.737, G.738, N.756, Y.757, G.758, P.759, T.760, V.764, K.953 Ligands: AMP.2 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:W.672, A:F.711, A:V.764 Hydrogen bonds: A:V.764, A:K.953, A:K.953 Salt bridges: A:K.953 LEU.3: 14 residues within 4Å: Chain B: F.667, D.668, W.672, F.711, G.737, G.738, N.756, Y.757, G.758, P.759, T.760, V.764, K.953 Ligands: AMP.4 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:W.672, B:F.711, B:V.764 Hydrogen bonds: B:V.764, B:K.953, B:K.953 Salt bridges: B:K.953

2 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.2: 17 residues within 4Å: Chain A: T.623, G.737, G.738, D.739, K.740, N.755, N.756, Y.757, G.758, P.759, T.760, I.784, D.848, F.860, R.863, K.953 Ligands: LEU.1 18 PLIP interactions: 17 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:G.738, A:N.756, A:G.758, A:T.760, A:T.760, A:T.760, A:T.760, A:D.848, A:K.953, L.1 Water bridges: A:K.740, A:L.741, A:L.741, A:E.761, A:T.846, A:R.863 Salt bridges: A:K.953 pi-Stacking: A:Y.757 AMP.4: 17 residues within 4Å: Chain B: T.623, G.737, G.738, D.739, K.740, N.755, N.756, Y.757, G.758, P.759, T.760, I.784, D.848, F.860, R.863, K.953 Ligands: LEU.3 19 PLIP interactions: 18 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:G.738, B:N.756, B:G.758, B:T.760, B:T.760, B:T.760, B:T.760, B:D.848, B:K.953, L.3 Water bridges: B:T.623, B:T.714, B:K.740, B:L.741, B:E.761, B:T.846, B:R.863 Salt bridges: B:K.953 pi-Stacking: B:Y.757

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Peng, Y.J., Structure of McyB-C1A1 complexed with L-Leu and AMP. To Be Published

Release Date

2023-12-13

Peptides

Microcystin synthetase B (Fragment): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Microcystin synthetase B (Fragment)