SMTL ID : 8hm3.1 (1 other biounit)

Complex of PPIase-BfUbb

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

hetero-1-1-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: N.60, Q.62 No protein-ligand interaction detected (PLIP) GOL.2: 3 residues within 4Å: Chain B: Q.299, K.301, R.304 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.301, B:R.304, B:R.304 GOL.3: 7 residues within 4Å: Chain B: D.195, M.208, M.213, V.214, Y.238, H.241, H.257 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:V.214 Water bridges: B:D.195, B:H.257 GOL.4: 1 residues within 4Å: Chain B: K.381 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.381

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 6 residues within 4Å: Chain B: R.29, F.31, D.32, G.33, V.38, K.418 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.29, B:D.32, B:G.33 Water bridges: B:K.418, B:K.418 Salt bridges: B:K.418

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, K. et al., Bacteroides fragilis ubiquitin homologue drives intraspecies bacterial competition in the gut microbiome. Nat Microbiol (2024)

Release Date

2023-11-29

Peptides

Putative ubiquitin: A
Peptidylprolyl isomerase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative ubiquitin

Peptidylprolyl isomerase

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