SMTL ID : 8hmm.1

Crystal structure of AoRhaA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.74, W.104, N.133, T.134 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.134 Hydrogen bonds: A:W.104 Water bridges: A:N.133, A:N.133, A:N.133 NAG.2: 3 residues within 4Å: Chain A: K.119, Y.214, N.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.119 NAG.3: 7 residues within 4Å: Chain A: G.347, G.349, G.350, D.406, N.407, T.410, L.412 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.406, A:T.410 Water bridges: A:N.407, A:N.407 NAG.4: 4 residues within 4Å: Chain A: K.389, N.425, T.427, L.428 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.389 Water bridges: A:N.425 NAG.5: 3 residues within 4Å: Chain A: R.126, R.171, N.498 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.126, A:R.171, A:N.498 Water bridges: A:Y.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makabe, K. et al., Aspergillus oryzae alpha-l-rhamnosidase: Crystal structure and insight into the substrate specificity. Proteins (2024)

Release Date

2023-12-06

Peptides

Bac_rhamnosid6H domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bac_rhamnosid6H domain-containing protein