SMTL ID : 8hnc.1

Cryo-EM structure of human OATP1B1 in complex with bilirubin

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.524 No protein-ligand interaction detected (PLIP)

1 x BLR: 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid(Non-covalent)

BLR.2: 11 residues within 4Å: Chain A: F.245, Y.373, I.374, F.377, T.378, F.381, L.399, G.400, T.403, F.407, I.600 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.373, A:I.374, A:I.374, A:I.374, A:F.377, A:F.377, A:F.381, A:L.399, A:T.403, A:F.407, A:I.600 Hydrogen bonds: A:Y.373, A:T.378

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.537, Y.538, S.539 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:S.539

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shan, Z. et al., Cryo-EM structures of human organic anion transporting polypeptide OATP1B1. Cell Res. (2023)

Release Date

2023-09-13

Peptides

Solute carrier organic anion transporter family member 1B1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Solute carrier organic anion transporter family member 1B1

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