SMTL ID : 8hnq.1

The structure of a alcohol dehydrogenase AKR13B2 with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.87, F.90, V.91, I.92, V.128, R.130, I.131, D.132 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.92, A:I.92, A:D.132 Water bridges: A:P.86, A:Y.87

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 28 residues within 4Å: Chain A: G.31, A.32, M.33, R.34, D.66, Y.71, K.95, H.137, R.138, S.167, Q.187, W.214, A.215, P.216, L.217, A.218, S.219, G.220, I.257, P.258, G.259, T.260, G.261, K.262, H.265, E.268, N.269 Ligands: O4B.4 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:W.214, A:W.214 Hydrogen bonds: A:A.32, A:M.33, A:D.66, A:Y.71, A:R.138, A:R.138, A:S.167, A:Q.187, A:A.215, A:L.217, A:S.219, A:G.220, A:G.259, A:T.260, A:G.261, A:E.268, A:N.269 Water bridges: A:R.34, A:S.219, A:K.262, A:K.262, A:E.268 Salt bridges: A:R.34, A:K.262, A:H.265 pi-Stacking: A:H.265

2 x O4B: 1,4,7,10,13,16-HEXAOXACYCLOOCTADECANE(Non-covalent)

O4B.3: 4 residues within 4Å: Chain A: L.13, A.273, I.275, T.276 No protein-ligand interaction detected (PLIP) O4B.4: 7 residues within 4Å: Chain A: M.33, L.98, W.106, H.137, R.138, W.214 Ligands: NAP.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.138 Water bridges: A:Q.108

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, M. et al., The structure of AKR13B2. To Be Published

Release Date

2023-12-20

Peptides

NADPH-dependent aldo/keto reductase AKR13B2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NADPH-dependent aldo/keto reductase AKR13B2