SMTL ID : 8hoa.1

ScRIPK mutant K124R

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: I.43, G.44, G.46, G.47, G.49, V.51, A.70, R.72, V.101, E.118, F.119, M.120, S.124, S.171, L.174, D.185 Ligands: FMT.3 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:I.43, A:G.46, A:G.47, A:E.118, A:M.120, A:S.124, A:S.171, A:S.171, A:D.185 Water bridges: A:R.72, A:R.72, A:S.124, A:S.124, A:S.124, A:K.169, A:S.184, A:D.185 Salt bridges: A:R.72

1 x HX2: (2R,5R)-hexane-2,5-diol(Non-covalent)

HX2.2: 4 residues within 4Å: Chain A: V.24, T.26, E.29, K.61 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:T.26

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: G.123, S.124, K.127 Ligands: ATP.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.124, A:K.127 Water bridges: A:S.124, A:E.126 FMT.4: 3 residues within 4Å: Chain A: R.35, S.38, T.40 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.35, A:S.38, A:T.40, A:T.40 FMT.5: 2 residues within 4Å: Chain A: I.43, G.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.43 FMT.6: 1 residues within 4Å: Chain A: L.73 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fang, J. et al., Receptor-like cytoplasmic kinase ScRIPK in sugarcane regulates disease resistance and drought tolerance in Arabidopsis. Front Plant Sci (2023)

Release Date

2023-10-18

Peptides

Hypothetical protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypothetical protein