SMTL ID : 8hoo.1

Crystal structure of the P450 BM3 heme domain mutant F87A in complex with Im-C6-Tyr-Nap

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

homo-dimer

Ligands

2 x I7X- TYR- ALN: Im-C6-Tyr-Nap(Non-covalent)

I7X-TYR-ALN.1: 17 residues within 4Å: Chain A: L.22, P.27, V.28, F.44, R.49, T.51, Y.53, S.74, Q.75, A.76, L.190, T.270, A.330, A.332, M.356, L.439 Ligands: HEM.3 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.22, A:P.27, A:P.27, A:V.28, A:F.44, A:T.51, A:Q.75, A:A.76, A:L.190, A:L.190 Hydrogen bonds: A:Q.75, A:A.76 Water bridges: A:S.74 Salt bridges: A:R.49 pi-Cation interactions: A:R.49 I7X-TYR-ALN.2: 18 residues within 4Å: Chain B: L.22, P.27, V.28, F.44, A.46, R.49, T.51, Y.53, S.74, Q.75, A.76, L.190, T.270, A.330, A.332, M.356, L.439 Ligands: HEM.4 20 PLIP interactions: 20 interactions with chain B Hydrophobic interactions: B:L.22, B:P.27, B:P.27, B:V.28, B:F.44, B:A.46, B:R.49, B:T.51, B:Q.75, B:A.76, B:L.190, B:L.190 Hydrogen bonds: B:Y.53, B:Q.75, B:A.76 Water bridges: B:S.74, B:M.187, B:Q.191 Salt bridges: B:R.49 pi-Cation interactions: B:R.49

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.3: 25 residues within 4Å: Chain A: K.71, L.77, L.88, A.89, W.98, F.109, T.262, A.266, G.267, T.270, T.271, T.329, A.330, F.333, P.394, F.395, G.396, R.400, A.401, C.402, I.403, G.404, F.407, A.408 Ligands: I7X-TYR-ALN.1 19 PLIP interactions: 18 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.88, A:A.89, A:F.109, A:T.262, A:A.266, A:F.395, A:I.403, A:F.407 Hydrogen bonds: A:R.400, A:R.400 Water bridges: A:K.71, A:K.71, A:S.334, A:S.334, A:S.334 Salt bridges: A:K.71, A:R.400 Metal complexes: A:C.402, H2O.37 HEM.4: 24 residues within 4Å: Chain B: K.71, L.77, L.88, A.89, W.98, F.109, A.266, G.267, T.270, T.271, T.329, A.330, F.333, P.394, F.395, G.396, R.400, A.401, C.402, I.403, G.404, F.407, A.408 Ligands: I7X-TYR-ALN.2 18 PLIP interactions: 17 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: B:A.89, B:F.109, B:A.266, B:F.395, B:I.403, B:F.407 Hydrogen bonds: B:R.400, B:R.400 Water bridges: B:K.71, B:H.102, B:S.334, B:S.334, B:S.334, B:R.400 Salt bridges: B:K.71, B:R.400 Metal complexes: B:C.402, H2O.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, Y. et al., Crystal structure of the P450 BM3 heme domain mutant F87A in complex with Im-C6-Tyr-Nap. To Be Published

Release Date

2023-12-13

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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