SMTL ID : 8hov.1 (2 other biounits)

Crystal structure of Hms1p from Saccharomyces cerevisiae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

homo-dimer

Ligands

1 x DT- DC- DA- DC- DG- DC- DA- DT: DNA (5'-D(*TP*CP*AP*CP*GP*CP*AP*T)-3')(Non-covalent)

DT-DC-DA-DC-DG-DC-DA-DT.1: 19 residues within 4Å: Chain A: H.3, I.6, E.7, Y.10 Chain B: N.4, E.7, K.8, R.11, N.15, N.58, K.59 Ligands: DA-DT-DG-DC-DG-DT-DG-DA.2, DA-DT-DG-DC-DG-DT-DG-DA.2, DA-DT-DG-DC-DG-DT-DG-DA.2, DA-DT-DG-DC-DG-DT-DG-DA.2, DA-DT-DG-DC-DG-DT-DG-DA.2, DA-DT-DG-DC-DG-DT-DG-DA.2, DA-DT-DG-DC-DG-DT-DG-DA.2, DA-DT-DG-DC-DG-DT-DG-DA.2 Protein-ligand interaction information (PLIP) not available

1 x DA- DT- DG- DC- DG- DT- DG- DA: DNA (5'-D(*AP*TP*GP*CP*GP*TP*GP*A)-3')(Non-covalent)

DA-DT-DG-DC-DG-DT-DG-DA.2: 17 residues within 4Å: Chain A: H.3, N.4, E.7, K.8, R.11, N.15, N.58, K.59 Chain B: Y.10 Ligands: DT-DC-DA-DC-DG-DC-DA-DT.1, DT-DC-DA-DC-DG-DC-DA-DT.1, DT-DC-DA-DC-DG-DC-DA-DT.1, DT-DC-DA-DC-DG-DC-DA-DT.1, DT-DC-DA-DC-DG-DC-DA-DT.1, DT-DC-DA-DC-DG-DC-DA-DT.1, DT-DC-DA-DC-DG-DC-DA-DT.1, DT-DC-DA-DC-DG-DC-DA-DT.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khan, M.H. et al., Molecular recognition of the promoter DNA signature sequence by Hms1p DBD. Int.J.Biol.Macromol. (2025)

Release Date

2024-06-12

Peptides

Transcription factor HMS1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Transcription factor HMS1

Related Entries With Identical Sequence