SMTL ID : 8hpv.1

Cryo-EM structure of SARS-CoV-2 Omicron Prototype S-trimer in complex with fab L4.65 and L5.34

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: G.326, F.329, N.330 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain F: G.326, N.330 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain K: G.326, N.330 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, S. et al., Dosing interval regimen shapes potency and breadth of antibody repertoire after vaccination of SARS-CoV-2 RBD protein subunit vaccine. Cell Discov (2023)

Release Date

2024-01-31

Peptides

Spike protein S2': AFK
fab L5.34: BIN
fab L5.34: CJO
fab L4.65: DGL
fab L4.65: EHM

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
B

K
C

B
M

I
E

N
R

C
N

J
F

O
S

D
H

G
P

L
I

E
L

H
Q

M
J

Spike protein S2'

fab L5.34

fab L5.34

fab L4.65

fab L4.65

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