SMTL ID : 8hr0.1

The complex structure of COPII coat with HCoV-OC43 DD sorting motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.34 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.61, C.66, C.85, C.88 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.61, A:C.66, A:C.85, A:C.88 ZN.2: 5 residues within 4Å: Chain B: C.89, C.92, T.94, C.110, C.113 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.89, B:C.110, B:C.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, Y. et al., SARS-CoV-2 spike host cell surface exposure promoted by a COPI sorting inhibitor. Acta Pharm Sin B (2023)

Release Date

2023-12-20

Peptides

Protein transport protein Sec23A: A
Protein transport protein Sec24A: B
Vesicle-trafficking protein SEC22b: C
HCoV-OC43: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Protein transport protein Sec23A

Protein transport protein Sec24A

Vesicle-trafficking protein SEC22b

HCoV-OC43

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