SMTL ID : 8hr6.1

leucine DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ from Bacillus thuringiensis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.52 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 14 residues within 4Å: Chain A: T.152, G.184, N.185, V.186, D.205, I.206, N.207, P.225, C.239, A.240, L.241, S.261, A.262, N.263 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:T.152 Hydrogen bonds: A:V.183, A:N.185, A:V.186, A:I.206, A:N.207, A:A.240, A:S.261, A:N.263, A:N.263 NAD.9: 15 residues within 4Å: Chain B: T.152, G.184, N.185, V.186, D.205, I.206, N.207, P.225, C.239, A.240, L.241, S.261, A.262, N.263, N.289 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:T.152, B:N.289 Hydrogen bonds: B:T.152, B:V.183, B:N.185, B:V.186, B:I.206, B:N.207, B:A.240, B:N.263, B:N.263

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: K.65, G.66, Y.69, Y.286, D.338 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.65 SO4.3: 6 residues within 4Å: Chain A: K.93, S.94, F.98, T.121, D.124, I.127 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.121, A:D.124 Salt bridges: A:K.93 SO4.4: 2 residues within 4Å: Chain A: T.121, V.122 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.122 SO4.5: 4 residues within 4Å: Chain A: P.150, H.189, K.192, H.193 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.189 Salt bridges: A:H.189, A:K.192, A:H.193 SO4.6: 4 residues within 4Å: Chain A: G.26, K.28, I.86, D.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.28, A:I.86 Salt bridges: A:K.28 SO4.7: 5 residues within 4Å: Chain A: H.34, D.35, T.68, Y.69, I.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.35, A:D.35, A:Y.69 Salt bridges: A:H.34 SO4.8: 4 residues within 4Å: Chain A: R.46, R.62, L.63, N.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.264 Salt bridges: A:R.46, A:R.62 SO4.10: 5 residues within 4Å: Chain B: R.46, R.62, L.63, N.263, N.264 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.264 Salt bridges: B:R.46, B:R.62 SO4.11: 1 residues within 4Å: Chain B: R.357 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.357 SO4.12: 1 residues within 4Å: Chain B: Q.106 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.106 SO4.13: 3 residues within 4Å: Chain B: K.93, S.94, E.95 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.93, B:E.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, X. et al., A Tri-Enzyme Cascade for Efficient Production of L-2-Aminobutyrate from L-Threonine. Chembiochem (2023)

Release Date

2024-03-20

Peptides

Leucine dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Leucine dehydrogenase

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