SMTL ID : 8hr8.1

Structure of heptameric RdrA ring

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

5 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 17 residues within 4Å: Chain A: N.22, P.24, T.27, D.31, L.32, I.33, G.79, G.81, K.82, T.83, T.84, D.221, D.222, D.224, V.376, R.377 Chain C: K.300 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:N.22, A:D.31, A:I.33, A:G.79, A:A.80, A:G.81, A:K.82, A:T.83, A:T.83, A:T.84, A:T.84, A:D.224, A:R.377 Salt bridges: A:K.82, A:R.377, A:R.377, C:K.300 ATP.2: 18 residues within 4Å: Chain A: K.300 Chain B: N.22, L.23, P.24, T.27, D.31, L.32, I.33, G.79, A.80, G.81, K.82, T.83, T.84, D.221, D.222, V.376, R.377 17 PLIP interactions: 2 interactions with chain A, 15 interactions with chain B Salt bridges: A:K.300, A:K.300, B:K.82, B:R.377, B:R.377 Hydrogen bonds: B:N.22, B:D.31, B:I.33, B:G.79, B:A.80, B:G.81, B:K.82, B:T.83, B:T.83, B:T.84, B:T.84, B:R.377 ATP.3: 19 residues within 4Å: Chain D: K.300 Chain E: N.22, P.24, T.27, D.31, L.32, I.33, R.78, G.79, A.80, G.81, K.82, T.83, T.84, D.221, D.222, D.224, V.376, R.377 20 PLIP interactions: 19 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:N.22, E:D.31, E:I.33, E:R.78, E:G.79, E:A.80, E:G.81, E:K.82, E:T.83, E:T.83, E:T.84, E:T.84, E:D.221, E:D.222, E:D.224 Salt bridges: E:K.82, E:R.377, E:R.377, E:R.377, D:K.300 ATP.4: 19 residues within 4Å: Chain E: K.300 Chain F: N.22, P.24, T.27, D.31, L.32, I.33, R.78, G.79, G.81, K.82, T.83, T.84, D.221, D.222, D.224, T.225, V.376, R.377 19 PLIP interactions: 17 interactions with chain F, 2 interactions with chain E Hydrogen bonds: F:N.22, F:D.31, F:I.33, F:G.79, F:A.80, F:G.81, F:K.82, F:T.83, F:T.83, F:T.84, F:T.225 Salt bridges: F:R.78, F:R.78, F:K.82, F:R.377, F:R.377, F:R.377, E:K.300, E:K.300 ATP.5: 17 residues within 4Å: Chain F: K.300 Chain G: N.22, L.23, P.24, T.27, D.31, L.32, I.33, R.78, G.79, G.81, K.82, T.83, T.84, D.221, D.222, R.377 18 PLIP interactions: 16 interactions with chain G, 2 interactions with chain F Hydrogen bonds: G:N.22, G:D.31, G:I.33, G:G.79, G:G.81, G:K.82, G:T.83, G:T.83, G:T.84, G:T.84 Salt bridges: G:R.78, G:R.78, G:K.82, G:R.377, G:R.377, G:R.377, F:K.300, F:K.300

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, Y. et al., Molecular basis of RADAR anti-phage supramolecular assemblies. Cell (2023)

Release Date

2023-02-01

Peptides

Archaeal ATPase: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
D

D
E

E
F

F
G

G
H

Archaeal ATPase

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