SMTL ID : 8hrd.4 (3 other biounits)

Crystal structure of the receptor binding domain of SARS-CoV-2 Delta variant in complex with IMCAS74 Fab and W14 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: G.21, F.24, N.25, V.49, L.50 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.24, A:L.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rao, X. et al., Defining a de novo non-RBM antibody as RBD-8 and its synergistic rescue of immune-evaded antibodies to neutralize Omicron SARS-CoV-2. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-12-20

Peptides

Spike protein S1: A
IMCAS74 Fab heavy chain: B
IMCAS74 Fab light chain: C
W14 Fab heavy chain: D
W14 Fab light chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
T

B
W

C
X

D
Y

E
Z

Spike protein S1

IMCAS74 Fab heavy chain

IMCAS74 Fab light chain

W14 Fab heavy chain

W14 Fab light chain

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