- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)
G3H.2: 8 residues within 4Å:- Chain A: S.152, C.153, T.154, H.180, T.183, T.211, R.234
- Ligands: NAD.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:S.152, A:C.153, A:T.154, A:T.154, A:T.154, A:T.211, A:R.234
- Water bridges: A:G.212
- Salt bridges: A:H.180
G3H.8: 9 residues within 4Å:- Chain B: S.152, C.153, T.154, H.180, T.183, T.211, R.234, N.315
- Ligands: NAD.7
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:S.152, B:T.154, B:T.154, B:T.211, B:R.234
- Water bridges: B:R.198, B:S.210
- Salt bridges: B:H.180
G3H.11: 9 residues within 4Å:- Chain C: S.152, C.153, T.154, H.180, T.183, T.211, R.234, N.315
- Ligands: NAD.10
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:C.153, C:T.154, C:T.154, C:T.154, C:T.211, C:R.234
- Water bridges: C:S.152, C:S.152, C:R.198, C:T.211
- Salt bridges: C:H.180
G3H.14: 7 residues within 4Å:- Chain D: S.152, C.153, T.154, H.180, T.211, R.234
- Ligands: NAD.13
9 PLIP interactions:9 interactions with chain D- Hydrogen bonds: D:S.152, D:S.152, D:C.153, D:T.154, D:T.154, D:G.212, D:R.234
- Water bridges: D:T.183
- Salt bridges: D:H.180
- 3 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 7 residues within 4Å:- Chain A: D.49, S.50, I.51, G.53
- Chain B: T.284, V.287, H.288
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:I.51, A:R.54, B:T.284
GOL.4: 3 residues within 4Å:- Chain A: G.184
- Chain C: A.191
- Ligands: NAD.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.184
- Water bridges: A:G.184
GOL.15: 6 residues within 4Å:- Chain C: T.284, V.287
- Chain D: S.50, I.51, M.52, G.53
1 PLIP interactions:1 interactions with chain D- Water bridges: D:S.50
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: L.22, E.29, V.30, V.31, K.71, I.73
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.29
EDO.6: 4 residues within 4Å:- Chain A: D.38, N.39, K.40, Y.61
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.39, A:K.40
EDO.9: 4 residues within 4Å:- Chain B: K.301
- Chain C: T.209, S.210, Y.231
6 PLIP interactions:4 interactions with chain C, 2 interactions with chain B- Water bridges: C:R.197, C:P.208, C:T.209, C:S.210
- Hydrogen bonds: B:K.301, B:K.301
EDO.12: 3 residues within 4Å:- Chain B: T.209, Y.231
- Chain C: K.301
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain B- Hydrogen bonds: C:K.301, C:K.301
- Water bridges: B:R.197, B:P.208, B:S.210
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Son, H.F. et al., Structure-Guided Protein Engineering of Glyceraldehyde-3-phosphate Dehydrogenase from Corynebacterium glutamicum for Dual NAD/NADP Cofactor Specificity. J.Agric.Food Chem. (2023)
- Release Date
- 2023-12-06
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.99 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x G3H: GLYCERALDEHYDE-3-PHOSPHATE(Non-covalent)
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Son, H.F. et al., Structure-Guided Protein Engineering of Glyceraldehyde-3-phosphate Dehydrogenase from Corynebacterium glutamicum for Dual NAD/NADP Cofactor Specificity. J.Agric.Food Chem. (2023)
- Release Date
- 2023-12-06
- Peptides
- Glyceraldehyde-3-phosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H