SMTL ID : 8hty.1 (1 other biounit)

Candida boidinii Formate Dehydrogenase Crystal Structure at 1.4 Angstrom Resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: K.2, Q.56, H.57 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.56 Water bridges: A:K.2, A:K.2 Salt bridges: A:K.2, A:H.57 SO4.2: 2 residues within 4Å: Chain A: G.173, R.174 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.174 Water bridges: A:R.174 Salt bridges: A:R.174 SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.4: 1 residues within 4Å: Chain A: K.109 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.109 SO4.5: 2 residues within 4Å: Chain A: R.174, R.178 6 PLIP interactions: 6 interactions with chain A Water bridges: A:R.174, A:R.174, A:R.178, A:R.178 Salt bridges: A:R.174, A:R.178 SO4.6: 4 residues within 4Å: Chain A: Y.196, Q.197, A.198, R.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.198 Water bridges: A:R.211, A:R.211 Salt bridges: A:R.211 SO4.7: 3 residues within 4Å: Chain B: P.290, K.291, D.292 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.291 Water bridges: B:D.292, B:D.292 SO4.8: 1 residues within 4Å: Chain B: K.27 3 PLIP interactions: 3 interactions with chain B Water bridges: B:K.27, B:K.27 Salt bridges: B:K.27 SO4.9: 4 residues within 4Å: Chain B: I.346, L.349, E.352, Y.353 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.349, B:Y.353 SO4.10: 2 residues within 4Å: Chain B: G.173, R.174 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.174 Water bridges: B:R.174, B:I.175 Salt bridges: B:R.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gul, M. et al., Structural analysis of wild-type and Val120Thr mutant Candida boidinii formate dehydrogenase by X-ray crystallography. Acta Crystallogr D Struct Biol (2023)

Release Date

2023-01-18

Peptides

Formate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Formate dehydrogenase

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