SMTL ID : 8hvx.1

Crystal structure of SARS-Cov-2 main protease Y54C mutant in complex with PF07304814

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x 80I: [(3~{S})-3-[[(2~{S})-2-[(4-methoxy-1~{H}-indol-2-yl)carbonylamino]-4-methyl-pentanoyl]amino]-2-oxidanylidene-4-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]butyl] dihydrogen phosphate(Covalent)

80I.1: 17 residues within 4Å: Chain A: H.39, F.138, L.139, N.140, G.141, S.142, C.143, H.161, H.162, M.163, E.164, P.166, H.170, D.185, Q.187, T.188, A.189 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:H.39, A:E.164, A:A.189 Hydrogen bonds: A:F.138, A:G.141, A:S.142, A:S.142, A:C.143, A:E.164, A:E.164, A:E.164, A:Q.187 Salt bridges: A:H.39 80I.2: 18 residues within 4Å: Chain B: H.39, F.138, L.139, N.140, G.141, S.142, C.143, H.161, H.162, M.163, E.164, P.166, H.170, D.185, R.186, Q.187, T.188, A.189 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.189 Hydrogen bonds: B:H.39, B:F.138, B:G.141, B:S.142, B:S.142, B:C.143, B:H.162, B:E.164, B:E.164, B:E.164, B:Q.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiang, H. et al., Crystal structures of main protease (M pro ) mutants of SARS-CoV-2 variants bound to PF-07304814. Mol Biomed (2023)

Release Date

2024-01-17

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3C-like proteinase nsp5

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