SMTL ID : 8hxe.2 (1 other biounit)

Crystal structure of B3 L1 MBL in complex with 2-amino-5-(4-propylbenzyl)thiazole-4-carboxylic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.83, H.85, H.159 Ligands: ZN.2, 51I.3, SCN.4 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.83, A:H.85, A:H.159, H2O.1 ZN.2: 5 residues within 4Å: Chain A: D.87, H.88, H.224 Ligands: ZN.1, 51I.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.87, A:H.88, A:H.224, H2O.1

1 x 51I: 2-azanyl-5-[(4-propylphenyl)methyl]-1,3-thiazole-4-carboxylic acid(Non-covalent)

51I.3: 12 residues within 4Å: Chain A: H.83, D.87, H.88, H.159, S.184, S.186, P.188, H.224, A.227 Ligands: ZN.1, ZN.2, SCN.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.188 Hydrogen bonds: A:S.184, A:S.186 Water bridges: A:D.87 Salt bridges: A:H.83, A:H.159, A:H.224 pi-Stacking: A:H.224 pi-Cation interactions: A:H.224

1 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.4: 6 residues within 4Å: Chain A: H.85, F.123, H.159, P.188 Ligands: ZN.1, 51I.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yan, Y.H. et al., Discovery of 2-Aminothiazole-4-carboxylic Acids as Broad-Spectrum Metallo-beta-lactamase Inhibitors by Mimicking Carbapenem Hydrolysate Binding. J.Med.Chem. (2023)

Release Date

2023-11-01

Peptides

Metallo-beta-lactamase L1 type 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Metallo-beta-lactamase L1 type 3

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