SMTL ID : 8hxk.1

BANAL-20-236 S1 in complex with R. Affinis ACE2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: E.53, N.57, E.61, N.62, D.342, R.344 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.61 NAG-NAG.2: 4 residues within 4Å: Chain B: F.338, N.339, S.367, S.369 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: N.326, M.327, W.332 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.332 Hydrogen bonds: A:M.327 NAG.4: 2 residues within 4Å: Chain A: N.436, E.437 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.437 NAG.5: 4 residues within 4Å: Chain A: H.421, T.424, M.425, N.550 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.424 NAG.6: 2 residues within 4Å: Chain A: W.332, N.333 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.333 NAG.7: 2 residues within 4Å: Chain B: Y.365, N.366 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, X. et al., The selective effect of fecal-oral transmission on the S proteins of bat SARS-CoV-2 related coronaviruses in favor of stability over infectivity. To Be Published

Release Date

2024-01-10

Peptides

Angiotensin-converting enzyme: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Angiotensin-converting enzyme

Spike glycoprotein

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