SMTL ID : 8hyo.1

Crystal structure of AtHPPD-Y18031 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x CO: COBALT (II) ION(Non-covalent)

CO.1: 4 residues within 4Å: Chain A: H.198, H.280, E.366 Ligands: NW9.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.198, A:H.280, A:E.366 CO.3: 4 residues within 4Å: Chain B: H.198, H.280, E.366 Ligands: NW9.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.198, B:H.280, B:E.366

2 x NW9: 6-[(R)-[(2R,6R)-2,6-bis(oxidanyl)cyclohexyl]-oxidanyl-methyl]-3-(furan-2-ylmethyl)-1,5-dimethyl-quinazoline-2,4-dione(Non-covalent)

NW9.2: 18 residues within 4Å: Chain A: H.198, V.200, L.237, S.239, P.252, N.254, Q.265, H.280, M.307, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.252, A:F.353, A:F.364 pi-Stacking: A:F.353, A:F.353 NW9.4: 18 residues within 4Å: Chain B: H.198, V.200, L.237, S.239, P.252, N.254, Q.265, H.280, M.307, F.353, F.364, E.366, F.391, G.392, N.395, F.396, L.399 Ligands: CO.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:P.252, B:F.353, B:F.364 pi-Stacking: B:F.353, B:F.353

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, J. et al., Crystal structure of AtHPPD-Y18031 complex. To Be Published

Release Date

2023-12-20

Peptides

4-hydroxyphenylpyruvate dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

4-hydroxyphenylpyruvate dioxygenase